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	<title>MicrobeHunter.com &#187; algae</title>
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	<link>http://www.microbehunter.com</link>
	<description>of Microscopy, Microbes and More</description>
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		<title>Life in the Flower Pot Water (or: Comparing the Size of Prokaryotes and Eukaryotes)</title>
		<link>http://www.microbehunter.com/2010/09/08/life-in-the-flower-pot-water-or-comparing-the-size-of-prokaryotes-and-eukaryotes/</link>
		<comments>http://www.microbehunter.com/2010/09/08/life-in-the-flower-pot-water-or-comparing-the-size-of-prokaryotes-and-eukaryotes/#comments</comments>
		<pubDate>Wed, 08 Sep 2010 10:00:43 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Observations and pictures]]></category>
		<category><![CDATA[Theory]]></category>
		<category><![CDATA[algae]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[eukaryotes]]></category>
		<category><![CDATA[prokaryotes]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=2524</guid>
		<description><![CDATA[Over the past few years, I&#8217;ve met several students who wanted to see bacteria through the microscopes that we have at school. Unfortunately, these devices are not equipped with phase contrast optics. The transparent bacteria are therefore difficult (but not impossible) to see. The biggest draw-back, however, comes from a different source: some of the [...]]]></description>
			<content:encoded><![CDATA[<p><div id="attachment_2525" class="wp-caption alignright" style="width: 310px"><a href="http://www.microbehunter.com/?attachment_id=2525"><img src="http://www.microbehunter.com/wp/wp-content/uploads/2010/08/algae_bacteria_1-300x200.jpg" alt="algae, bacteria" title="algae_bacteria_1" width="300" height="200" class="size-medium wp-image-2525" /></a><p class="wp-caption-text">Large green algae (eukaryotes) and bacteria (prokaryotes).</p></div> Over the past few years, I&#8217;ve met several students who wanted to see bacteria through the microscopes that we have at school. Unfortunately, these devices are not equipped with phase contrast optics. The transparent bacteria are therefore difficult (but not impossible) to see. The biggest draw-back, however, comes from a different source: some of the optics are a bit dirty, and the resolution and contrast therefore low. Some of the microscopes have been in operation for about 30 years, and actually I&#8217;m a bit surprised that they still work as well as they do. Regular maintenance is a must, but this is a different issue.</p>
<p>I therefore found it necessary to take a picture of some bacteria using my own microscope. It too does not have phase contrast optics. I&#8217;ve taken a water sample from the dish of a flower pot. The dish collected the excess water from the pot to prevent it from creating a mess. The pot and dish has been standing in the sun for a few days and was green, a clear sign that algae and other photosynthetic organisms are thriving. I think that I do not need to mention that the water which filtered through the soil is an ideal growth medium for algae (rich in nutrients etc.). I took some of the green slime and under the microscope, I could clearly see both green algae and bacteria, nicely next to each other (see picture).</p>
<h2>Size of Bacteria and Algae</h2>
<p>Bacteria and Algae belong to two different categories. Bacteria are prokaryotes, algae are eukaryotes. Prokaryotes are generally much smaller, about 1 micrometer (1/100 mm) in diameter, while eukaryotes can have a diameter of about 10-100 micrometers. These are averages and generalizations, of course. Some prokaryotes can also grow into long filaments, it really depends much on the type of organism. The picture illustrates this difference in size quite nicely with both cell types next to each other.</p>
<p>The picture should also make something else clear: Due to their small size, it is difficult to bring the bacteria into focus. They tend to either actively swim away, wiggle around or drift away as more and more water evaporates from the slide. Due to their green color, algae can also be much more easily identified. If you look closely, you can see that unlike the green algae, the bacteria lack structure on the inside and appear blurred. We are already at the limits of the microscope&#8217;s resolution. Other images show that the bacteria are brighter on the inside and darker on the outside. This is due to the refraction of light and an optical artifact. Opening the condenser aperture diaphragm would make the dark fringes disappear, but also more difficult to see the bacterial cells.</p>
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		</item>
		<item>
		<title>Answering Reader Questions</title>
		<link>http://www.microbehunter.com/2010/08/26/answering-reader-questions-3/</link>
		<comments>http://www.microbehunter.com/2010/08/26/answering-reader-questions-3/#comments</comments>
		<pubDate>Thu, 26 Aug 2010 05:16:11 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Microscopy FAQ]]></category>
		<category><![CDATA[algae]]></category>
		<category><![CDATA[buffer]]></category>
		<category><![CDATA[permanent slide]]></category>
		<category><![CDATA[potassium buffer]]></category>
		<category><![CDATA[spirogyra]]></category>
		<category><![CDATA[wet mount]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=2512</guid>
		<description><![CDATA[Why use phosphate buffer when making a permanent slide of cheek cells? Assuming, that the buffer refers to phosphate buffered saline, the advantages are that the pH is stable and that the solution is isotonic to the cells. The cells, therefore, do not change shape. The solution is used to make dilutions of the cells [...]]]></description>
			<content:encoded><![CDATA[<p><strong>Why use phosphate buffer when making a permanent slide of cheek cells?</strong> Assuming, that the buffer refers to phosphate buffered saline, the advantages are that the pH is stable and that the solution is isotonic to the cells. The cells, therefore, do not change shape. The solution is used to make dilutions of the cells and to separate the cells from each other. The buffer contains sodium chloride, sodium phosphate. Other recipes also contain potassium chloride and potassium phosphate.</p>
<p>How should you remove extra water from a wet mount slide? Remove excess water with a piece of filter paper or tissue paper. Have a look at the following video for an explanation on how to make a wet-mount slide: <a href='http://www.microbehunter.com/2010/08/13/making-a-wet-mount-microscope-slide/'>Making a wet mount microscope slide</a></p>
<p><strong>How can I make a sample stick to a microscope slide?</strong> This depends on the sample. Bacterial suspensions should be first dried on the slide and then heat-fixed. The slide should be briefly heated over a Bunsen burner. This will immobilize the cells.</p>
<p><strong>How to permanent mount algae?</strong> They are frequently mounted in a water-based mounting medium, such as glycerin gelatin.</p>
<p><strong>Is Spirogyra microscopic?</strong> The individual cells can only be seen with the microscope, the whole algae can naturally be seen with the unaided eye as thin cotton-like filaments.</p>
<p><strong>If you observed the same organism on a prepared slide and a wet mount how would the images compare?</strong> This depends on the refractive index of mounting medium. Wet mounted specimens can move. Because they were generally not fixed in alcohol, they also do not show artifacts and (possible) shrinkage.</p>
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		</item>
		<item>
		<title>Making a wet mount microscope slide</title>
		<link>http://www.microbehunter.com/2010/08/13/making-a-wet-mount-microscope-slide/</link>
		<comments>http://www.microbehunter.com/2010/08/13/making-a-wet-mount-microscope-slide/#comments</comments>
		<pubDate>Fri, 13 Aug 2010 12:19:53 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Howto]]></category>
		<category><![CDATA[Techniques]]></category>
		<category><![CDATA[Videos]]></category>
		<category><![CDATA[algae]]></category>
		<category><![CDATA[cover glass]]></category>
		<category><![CDATA[sample]]></category>
		<category><![CDATA[slide]]></category>
		<category><![CDATA[specimen]]></category>
		<category><![CDATA[water]]></category>
		<category><![CDATA[wet mount]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=2500</guid>
		<description><![CDATA[This post explains how to make a wet mount. Video included!]]></description>
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<h2>What is a wet mount?</h2>
<p>In a wet mount, the specimen is suspended in a drop of liquid (usually water) located between slide and cover glass. The water refractive index of the water improves the image quality and also supports the specimen. In contrast to permanently mounted slides, wet mounts can not be stored over extended time periods, as the water evaporates. For this reason, a wet mount is sometimes also referred to as a &#8220;temporary mount&#8221; to contrast it from the &#8220;permanent mounts&#8221;, which can be stored over longer times. The permanently mounted slides use a solidifying mounting medium, which holds the cover glass in place. The naming can be a bit problematic, because it is also possible to make wet mounts that can store over extended time periods. These are special cases, however. </p>
<h2>Different types of wet mounts</h2>
<p>Wet mounts can be made using several different kinds of liquids. Water,  immersion oil and glycerin (glycerol) can be used, with water probably being the most commonly used. The source of the water is quite important, especially when observing living specimens. If you use water with a wrong osmotic potential (ie. too much or too little salt and mineral content), then there is the danger of damaging the specimen. A too high salt content can result in the specimen to lose too much water. Too low a salt content, and the specimen may swell and burst. </p>
<ul>
<li><strong>Using water from the natural habitat of the organism:</strong> In the case of water organisms, such as algae or ciliates, the liquid water should come directly from the sample. In this case the organism is immersed in its own natural environment. The microscopist uses a dropper to place a drop of pond water directly on the microscope slide.</li>
<li><strong>Using 0.9% salt water:</strong> In some cases water from the natural habitat may not be available. This is the case when observing bacteria or molds grown on petri-dishes. Yoghurt bacteria, for example, need to be diluted a lot before being able to observe them, otherwise they are too dense to be observed as single cells. In this case it is necessary to mix some salt (NaCl) into some water to ensure an optimal osmotic potential. This &#8220;physiological saline&#8221;, as it is called, can be made by dissolving 9 grams of table salt (NaCl) in 1 liter of water (or 0.9g Nacl in 100ml of water).</li>
<li><strong>Using tap water:</strong> If one wants to observe non-living specimens, such as dust samples, sand grains, or thin section cuts of plant material, then it is also possible to use regular tap water. These specimens are not osmotically sensitive. If the specimen is observed without water, in a dry condition, then the resolution and image quality may not be sufficiently high. I advise you to try out both to see the difference. The following post includes images of pollen grains mounted in air and water, for comparison: <a href='http://www.microbehunter.com/2010/05/13/the-effect-of-the-mounting-medium-on-image-quality/'>The effect of the mounting medium on specimen and image quality</a></li>
<li><strong>Using immersion oil:</strong> Some wet mounts are not made with water, but by using immersion oil. Immersion oil is usually placed on top of the cover glass. In this case the specimen does not get into contact with the oil. It is also possible to submerge the specimen in the oil, however. Heat-fixed bacteria can be observed directly by placing a drop of immersion oil on the specimen, without cover glass. The oil-immersion objective is then rotated directly into the oil for observation. It goes without saying, that this procedure can only be used for specimens that do not contain water (and are, therefore, not living). It also only works for specimens that stick to the glass slide &#8211; there is no cover glas. If you need to observe these specimens with a lower magnification (ie. no immersion objective), then one needs to use a cover glass, of course. Other specimens, such as synthetic textile fibers, are hydrophobic in nature, and do not like to be mixed with water. They tend to float on top of the water drop and this can be cause for air bubbles. In this case I also recommend to use immersion oil and a cover glass to keep the sample flat.</li>
<li><strong>Pure glycerin or glycerin-water mixtures:</strong> Glycerin has a strong tendency to withdraw water from the sample. For this reason it also acts as a preservative. On the down side, the glycerin may therefore cause the specimen to shrink and deform. Especially algae and other water organisms are sensitive to dehydration. Other specimens, such as sectioned or microtomed plant material are not as sensitive. The reason why glycerin is used is because of its high refractive index. This may be necessary to see certain structures. If a lower refractive index is needed, then one should mix some water into the glycerin. It is possible to seal the glycerin mount by applying nail polish to the sides of the cover glass. This will hold the cover glass in place for longer time periods. This is then an example of a wet mount, which was made into a permanent mount.</li>
</ul>
<h2>Advantages and disadvantage of a wet mount</h2>
<p>Compared to permanently mounted slides, wet mounts do have certain advantages:</p>
<ul>
<li><strong>Quick preparation:</strong> specimen fixation, dehydration and staining are not necessary (but possible, if required). For this reason, wet mounts are the first kind of mounts that students learn to make.</li>
<li><strong>Few artifacts:</strong> If there is no chemical and physical processing of the specimens before observation (no fixation), there are little artifacts and the specimens appear in their natural condition.</li>
<li><strong>Living and moving:</strong> It is possible to observe living and moving organisms. It is also possible to observe certain processes of life, such as feeding, cell division etc. (for water-based mounts)</li>
<li><strong>Natural colors:</strong> The colors are natural and not faded. The colors of permanently mounted specimens may fade over time.</li>
</ul>
<p>Disadvantages of wet mounts include:</p>
<ul>
<li><strong>Movement:</strong> The advantage of observing movement can also be a disadvantage. Due to the movement of the organisms it may be more difficult to take pictures or to make drawings. There is a solution to this problem: one can slow down ciliates and other protozoa by adding a solution such as <a href="http://www.carolina.com/product/885141.do">ProtoSlo</a>, which increases the viscosity of the water.</li>
<li><strong>Evaporation:</strong> The heat of the lamp causes the water to evaporate more quickly. More water must be added under the cover glass from time to time.</li>
<li><strong>Focus:</strong> Some organisms may swim vertically in the water and therefore move in and out of focus. Here it is important not to use too much or too little water. Too little water may squeeze the specimen between cover glass and slide.</li>
<li><strong>Storage:</strong> Wet mounts can not be stored over a longer time.</li>
</ul>
<h2>Materials and Method</h2>
<p>For making a wet mount you need these materials:</p>
<ul>
<li><strong>Microscope slides</strong></li>
<li><strong>Cover glasses</strong></li>
<li><strong>The specimen</strong> to be observed: make sure that the specimen is sufficiently small and thin. Thick specimens must either be cut (microtomed) into sections, be squeezed or torn apart.</li>
<li><strong>Water:</strong> take care that the osmotic potential of the water is compatible with the specimen. For example, do not use fresh water with marine specimens, and vice versa. Use pond water (and not tap water) for observing pond organisms.</li>
<li><strong>Droppers, pipette:</strong> these are for transferring the water</li>
<li><strong>Tweezers:</strong> for handling the specimen, the cover glass and for adding water
</ul>
<p>If the specimen is already in water (algae, ciliates etc.) then you can proceed the following way:</p>
<ol>
<li>Place a small drop of sample fluid (containing the specimen) in the center of the microscope slide.</li>
<li>Hold the cover glass on one side with the help of tweezers. Lower the cover glass onto the water drop at an angle.</li>
<li>Then slowly lower the cover glass into the liquid. This will minimize disturbing air bubbles.</li>
<li>Remove excess water with filter paper or tissue paper. The cover glass should not float freely. The surface tension of the water should hold it in place. Alternatively you can add more water using a pipette or tweezers.</li>
</ol>
<p>If the specimen is not in water:</p>
<ol>
<li>Place a small drop of water (without specimen) in the center of the microscope slide.</li>
<li>Place the specimen into the water.</li>
<li>Add some more water on top of the specimen and make sure that the specimen is completely submerged. Otherwise there is the possibility for air bubbles forming between cover glass and specimen. The remaining steps are the same as above.</li>
<li>Hold the cover glass on one side with the help of tweezers. Lower the cover glass onto the water drop at an angle.</li>
<li>Then slowly lower the cover glass into the liquid. This will minimize disturbing air bubbles.</li>
<li>Remove excess water with filter paper or tissue paper. The cover glass should not float freely. The surface tension of the water should hold it in place. Alternatively you can add more water using a pipette or tweezers.</li>
</ol>
<p>If you are using a dry specimen (dust, insect parts, etc.), then place a small drop of tap water</p>
<h2>How to prevent drying out</h2>
<p>The heat of the microscope light will evaporate the water relatively quickly. There are several possibilities to counteract this:</p>
<ul>
<li>Keep adding more water from the side of the cover glass. Surface tension will pull the water in.</li>
<li>Seal the sides of the cover glass with a thick layer of Vaseline (petroleum jelly). Press the cover glass against the slide so that the vaseline is able to seal off the water from the outside.</li>
<li>Use nail polish to seal off the cover glass. This is used when making wet mounts with glycerin. Keep the glycerin drop very small. The nail polish will not stick to those parts of the cover glass and slide which came into contact with the glycerin.</li>
<li>Use slides that have an indentation (concave) and are therefore able to hold more fluid. This only works for some samples because the liquid layer may be to thick. These slides are more expensive.</li>
<li>Use two additional cover glasses to support a third cover glass left and right. These two cover glasses serve as a distance holder for the third cover glass. This way the third cover glass does not float freely on the liquid but is held in place by the two supporting glasses. More fluid can be stored in a stable manner.</li>
</ul>
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		</item>
		<item>
		<title>Volvox</title>
		<link>http://www.microbehunter.com/2010/05/22/volvox/</link>
		<comments>http://www.microbehunter.com/2010/05/22/volvox/#comments</comments>
		<pubDate>Sat, 22 May 2010 10:00:18 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Observations and pictures]]></category>
		<category><![CDATA[algae]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[glycerol gelatin]]></category>
		<category><![CDATA[volvox]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=2445</guid>
		<description><![CDATA[Volvox is a fresh water green algae and a member of the Chlorophyta. The picture shows a spherical volvox colony, each ball can contain hundreds, if not thousands of individual cells. The picture shows six daughter colonies inside the main colony. The main colony disintegrates and the daughter colonies are then released. Volvox is a [...]]]></description>
			<content:encoded><![CDATA[<p>
<div style='float:right; width:200px; margin-left:10px; margin-bottom:20px; margin-right:5px; clear:both;'>

<a href='http://www.microbehunter.com/wp/view-image?filename=http://www.microbehunter.com/wp/wp-content/uploads/2010/05/volvox.jpg&alt=&caption='>
<img src='http://www.microbehunter.com/wp/wp-content/uploads/2010/05/volvox.jpg' alt='' style='width:200px;'>
</a>
<div style='font-size:8pt; font-weight:bold; font-style:italic; padding-left:5px; padding-top:5px; margin:0px; line-height:12px;'> <br></div>
</div>
 Volvox is a fresh water green algae and a member of the <em>Chlorophyta</em>. The picture shows a spherical volvox colony, each ball can contain hundreds, if not thousands of individual cells. The picture shows six daughter colonies inside the main colony. The main colony disintegrates and the daughter colonies are then released. Volvox is a nice example of an organism which shows first signs of multicellularity. Larger colonies can be up to 1mm in diameter and can be seen with the unaided eye.</p>
<h2>Reproduction</h2>
<p>Volvox reproduces both sexually and asexually. During asexual reproduction cells from the equator of the colony move to the inside and divide to form daughter colonies. The daughter colonies will grow and multiply. The mother colony will then rupture and release the offspring. </p>
<p>During sexual reproduction, Volvox colonies form sperm and egg cells (ova). The sperm cells will swarm out to find ova in other colonies. The fertilized egg cells will then form new colonies.</p>
<h2>Growing and observing Volvox</h2>
<p>Microscopists who are interested in observing Volvox should try to investigate water samples from ponds and puddles.   It is also possible to grow Volvox at home. Volvox likes to grow in nutrient-rich water. Dilute some plant fertilizer in water and add some pond water containing Volvox (or other green algae that you want to grow). Place the container on the window sill for several days but prevent direct sunlight as this may cause overheating, and drives out the CO2 for photosynthesis from the water. Alternatively, you can also use a plankton net to catch the colonies.</p>
<p>For making permanent mounts, it&#8217;s probably best to use a water-based mounting medium such as glycerin gelatin. Solvent based media may dissolve the chlorophyll of the chloroplasts and may cause the cells to lose water and shrink. </p>
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		</item>
		<item>
		<title>Spirogyra Algae</title>
		<link>http://www.microbehunter.com/2009/01/25/spirogyra-algae/</link>
		<comments>http://www.microbehunter.com/2009/01/25/spirogyra-algae/#comments</comments>
		<pubDate>Sun, 25 Jan 2009 12:51:45 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Observations and pictures]]></category>
		<category><![CDATA[algae]]></category>
		<category><![CDATA[stacking]]></category>

		<guid isPermaLink="false">http://microscopy.okim.info/?p=1052</guid>
		<description><![CDATA[Microscopic picture of the algae Spirogyra. The algae possesses a spiral shaped chloroplast, which is clearly visible in the cell.]]></description>
			<content:encoded><![CDATA[<p>
<div style='float:right; width:200px; margin-left:10px; margin-bottom:20px; margin-right:5px; clear:both;'>

<a href='http://www.microbehunter.com/wp/view-image?filename=http://www.microbehunter.com/wp/wp-content/uploads/2009/spirogyra1.jpg&alt=Microscopic_picture_of_the_algae_Spirogyra.&caption=Microscopic_picture_of_the_algae_<i>Spirogyra</i>._The_algae_possesses_a_spiral_shaped_chloroplast,_which_is_clearly_visible_in_the_cell.'>
<img src='http://www.microbehunter.com/wp/wp-content/uploads/2009/spirogyra1.jpg' alt='Microscopic picture of the algae Spirogyra.' style='width:200px;'>
</a>
<div style='font-size:8pt; font-weight:bold; font-style:italic; padding-left:5px; padding-top:5px; margin:0px; line-height:12px;'>Microscopic picture of the algae <i>Spirogyra</i>. The algae possesses a spiral shaped chloroplast, which is clearly visible in the cell. <br></div>
</div>
<br />
<br><strong>Image Information:</strong> The image of <i>Spirogyra</i> is taken from a permanent slide. Several pictures were stacked and the contrast was enhanced. <br><br />
<br><strong>Background Information:</strong> <i>Spirogyra</i> is the genus name of a fresh water algae, of which there are over 400 individual species. The spiral chloroplast is characteristic for this genus. The organism can be found in clean ponds of high nutrient content (such as due to fertilization of nearby fields). It then grows to form slimy filamentous masses of algae. <i>Spirogyra</i> is capable of reproducing both sexually and asexually. A filament may fragment into smaller pieces, each one capable of forming new cells. During sexual reproduction two cells align with each other and form congugation tubes which connect the two cells and allow for the exchange of genetic material, forming zygospores.<br></p>
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