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		<title>Buying microscopes for children</title>
		<link>http://www.microbehunter.com/2011/12/03/buying-microscopes-for-children/</link>
		<comments>http://www.microbehunter.com/2011/12/03/buying-microscopes-for-children/#comments</comments>
		<pubDate>Sat, 03 Dec 2011 08:54:17 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Buying Advice]]></category>
		<category><![CDATA[Microscopy Basics]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[buying]]></category>
		<category><![CDATA[children]]></category>
		<category><![CDATA[purchasing]]></category>

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		<description><![CDATA[What are some of the things to look out for when buying a microscope for children? Here is a FAQ which covers the essential points.]]></description>
			<content:encoded><![CDATA[<p>Occasionally parents of my students contact me (usually around Christmas time) for advice because they want to buy a microscope as a present for their children. In the best case, they ask which microscopes we use in biology lab in school, in some other cases, they show me an advertisement for toy microscopes (often advertised with a 1000x magnification) and then ask me if the magnification is high enough to see cells. Only insiders know that anything beyond 400x magnification is probably not useful for beginning observation anyway. It is for this reason, that I decided to compile a short FAQ to help parents a little in finding an appropriate microscope. The last time when I was asked for advice, I showed the parent a microscope that we used in school and gave a quick introduction into stereo and compound microscopes. I then also showed the parent a catalog with school supplies, and gave the advice to contact them.</p>
<p><strong>How much can I expect to pay for a microscope for children?</strong> The minimum price for a useable microscope is around EUR 150/USD 200 and up. You would probably like to spend a bit more, but cheaper devices also exist which provide a useful picture, but may be less convenient and stable to use. EUR 300/USD 400 should give you already a very decent device. This is the price that many educational microscopes in schools have. Anything much less than EUR 150/USD 200 is likely not to be of sufficient quality, but simply because a microscope is expensive does not mean that it is automatically suitable. Specialized optics may quickly drive the price up, but may not be suitable or required. If you are buying blindly then you may spend money on unnecessary things, or waste money on a quite useless device. As a matter of fact, some individual microscope objectives can be more expensive than the whole microscope (microscopes are modular).</p>
<p><strong>How are cheaper microscopes different from more expensive ones?</strong> Modularity of the microscope, use of more specialized objectives and optics (plan objectives, apochromatic objectives&#8230; not needed for children) and quality of machining as well as brand name drive the price up. Devices containing many metal parts are more stable but also more expensive to manufacture.</p>
<p><strong>What can I expect to see under the microscope?</strong> This depends to a large extent on three factors: The type of microscope (stereo or compound), the quality (resolution) of the optics and (of course) the specimens that you look at. The type of microscope determines to a certain extent also the specimens that you can look at. With stereo microscopes you can observe opaque objects, such as rocks, whole plant parts or insects. With compound microscopes you can observe the much smaller cells.</p>
<p><strong>Which type of microscope, stereo or compound, should I buy?</strong> The choice of the right microscope type (stereo vs compound) is a fundamental issue. After all, you do want to keep the child interested. Buy stereo microscopes if the child is very young (up to 10 years) or if you want to do uncomplicated natural observation without much specimen preparation. Buy stereo microscopes also if you want to extend an already existing hobby or interest such as stamp collecting, collecting coins, minerals, rocks, insects and butterflies or plants. These objects can all be directly viewed under the stereo microscope, without destroying them. Buy compound microscopes if you or your child is also interested in specimen preparation or if you are interested in seeing smaller objects. Older children may be more interested in compound microscopes, as this is the kind that gives more &#8220;interactivity&#8221; and more possibilities for preparing specimens. Older children may also be interested in making a slide collection. The children can use different magnifications and have to learn to operate both the coarse and fine focus knobs. If you want to to observe water samples and cells, then compound microscopes are the way to go. Be aware that some children may not consider stereo microscopes as &#8220;real&#8221; microscopes and that they may be disappointed if they are not able to observe paramecia and other small water life that they read about in books. Also be aware that compound microscopes need more guidance and practice, especially if specimens are to be prepared. Many of the following FAQ will deal with compound microscopes. For more information about these two types of microscopes, read: <a href='http://www.microbehunter.com/2008/12/23/types-of-light-microscopes/'>Types of Light Microscopes</a>.</p>
<p><strong>Where can I buy microscopes?</strong> Microscopes can be bought from specialized microscope dealers. These often also supply schools and universities with microscopes. Do not buy second hand devices unless you really know what you are doing. There are simply too many things that can go wrong, even if the quality of the second hand microscope is otherwise quite good. It&#8217;s well possible that second hand microscopes are equipped with specialized objectives that are not suitable (or simply too expensive) for children. Unlike consumer products, which come out of the box, microscopes are commonly assembled according to the research needs and second hand microscopes may have a research or medical background. It is probably best to personally get advice from a microscope shop.</p>
<p><strong>Is there one single criterion that I should look out for when buying a compound microscope?</strong> Look for two things in microscopes. The microscope should be made of metal (and be heavy) and the objectives should be DIN standard. Look at the objective of the microscope and check if it has the number 160 written on it. This refers to a 160 mm tube length. Microscopes that are able to accept these optics often (not always) have a minimum quality. Most educational and routine microscopes use these, plastic toy microscopes do not. These objectives are interchangeable with each other. Microscopes that use infinity corrected objectives have an infinity sign printed on them and are expensive and can be found more on research microscopes. I just mention this for the sake of completion. The material of which the body of the microscope is made is also relevant. Devices made mostly of plastic can be considered toys, and these do not provide the stability and optical quality to keep children interested over a longer time period.</p>
<p><strong>Do my children need support?</strong> A microscope is a scientific instrument and it use requires appropriate education and support. After all, inappropriate handling may damage the device (crashing the objective into the slide, for example). Sooner or later the child will have observed all the provided slides and samples and will want to observe new things. Guidance is then needed to prepare more samples (unless you buy ready-made slides). Safety issues must also be considered: How can you protect the microscope and how can you protect the child? Some chemicals used for preparing samples are toxic, do not use them and do not blindly trust them. There are also many non-toxic alternatives around, however, and the parent may need to do a bit of research. There is also the danger of cutting oneself, when preparing samples. You may also need to do some research on the different types of specimens that can be observed &#8211; yes a microscope does require some guidance.</p>
<p><strong>Should I buy a second hand microscope?</strong> Unless you have worked with microscopes yourself and unless you know what you are doing, I would not buy them second hand. Maybe you know a trustworthy second hand dealer, in this case I would also take second hand microscopes into consideration. Be aware that a quality second hand microscope (such as the &#8220;Zeiss Standard&#8221;) can be obtained for a fairly low price, but that this microscope provides much greater value than new no-name devices, which may be more expensive. Without advice you run the risk of buying a microscope with objectives that are not appropriate for education, or microscopes that are not operating reliably. There is no way to see from a picture if the objectives are intact, if there is no stage drift and if the gear operate smoothly. Hospitals and research institutions sometimes sell useful used microscopes, but these may be equipped with specialized optics. Also do not buy microscopes from people who do not know much about them. Non experts are not able to assess the quality of a microscope. There are so many things that you have to look out for, that it is not possible for me to summarize this in a few lines. I may write a second FAQ about them.</p>
<p><strong>Is there anything that I should not buy?</strong> Do not buy second hand microscopes unless you also buy them from a shop, which is able to give warranty and service. Do not buy specialized microscopes such as inverted microscopes, metallurgical or polarizing microscopes. Again, if you search Ebay, you may not always know the difference. Do not buy scopes that have only a mirror instead of a lamp. Kids may point them to the sun and destroy their eye sight. Mirrors also do not provide enough light intensity. Do not buy historical microscopes. They should go into the museum and also may not have the optical quality (fungal growth on the optical surfaces is a problem, etc.). </p>
<p><strong>What&#8217;s the problem with plastic (&#8220;toy&#8221;) microscopes?</strong> These are microscopes that are sold in a colorful cardboard and Styrofoam box together with a wide range of different accessories. There is a general agreement among enthusiast microscopists and teachers that these microscopes should not be bought. First, they are not as cheap as one may think and for a little more money one can already obtain a microscope with substantially better optics. Toy microscopes are often difficult to focus often lacking a coarse and fine-focus knob. Do not forget, that the tolerances of the mechanics has to be extremely narrow. Plastic gears simply can&#8217;t keep up with metal gears. They do not have standardized objectives and the resolution of the picture is low. Often the magnification is also advertised as unrealistically high (1000x). The low light intensity (battery operated or mirror) makes it difficult to see the specimens properly. If money is indeed an issue, then it&#8217;s better to get a simple but solid stereo microscope. They are more fun to use. In my opinion, children need stable and solid devices that produce a sharp, contrasty and bright image. Kids are demanding these days. The images that the microscope produces has to compete with the strong visual impressions from television, the Internet and magazines. A low-contrast, washed-out, dark picture produced by a toy microscope will not captivate the children for an extended time. My 2 cents. Download <a href='http://www.microbehunter.com/2011/11/23/microbehunter-magazine-november-2011/'>Microbehunter Magazine (November 2011)</a> for a comparison between toy microscopes and more suitable microscopes.</p>
<p><strong>I already bought a toy microscope! What should I do?</strong> Keep it and buy a &#8220;real&#8221; one and compare the image quality. Then write an article about it for this magazine.</p>
<p><strong>Where can I save money?</strong> You do not need: Köhler illumination (for photography through the microscope), 100x oil immersion objective (more expensive and difficult to use for children). Actually I really dis-advise getting a 100x oil immersion objective. This requires the use of immersion oil, which is messy to use and has more specific applications. You also do not need phase contrast and DIC, these are expensive anyway. Plan objectives are more expensive and useful for photography. I mention this, because second-hand devices may come with these. A bright-field condenser with a filter holder beneath the stage is highly recommended, however. This allows for simple dark-field microscopy (bright specimen on dark background), if you insert a dark-field patch-stop into the filter holder. A device with a mechanical stage (and not only stage clips) is very recommended. It makes operating the microscope easier. A mechanical stage allows you to move the specimen slide horizontally and vertically by turning two knobs.</p>
<p><strong>Which objectives and eyepieces should I buy?</strong> Buy achromatic DIN objectives with the magnifications 4x, 10x, 40x and a 10x eyepiece. A 100x oil immersion is not needed and may even be counter-productive. This objective requires advanced techniques and is more expensive. Better to get a 60x objective instead (more rare), but this is optional. This is a standard combination and microscope dealers supplying for schools will already offer these combinations.</p>
<p><strong>Should I buy a microscope with a &#8220;name&#8221; or a no-name device?</strong> This is a long question to answer and the opinions diverge on this issue. From a quality perspective, all &#8220;big four&#8221; microscope manufacturers (Olympus, Nikon, Leica, Zeiss) produce quality microscopes and also have cheaper introductory microscopes for schools in their program. Still the cost of these microscopes is often higher, but also their resale value. Many no-name devices do carry the name of the importer, and the quality can cover a wide range. I personally have a rather pragmatic view on the issue. If one wants is not able or willing to spend much money on a microscope, then a &#8220;no-name&#8221; device is probably the only way to go (unless one buys second hand). Some people think that it is better to buy a used &#8220;big four&#8221; microscope than a new &#8220;no-name&#8221; microscope of the same price, also because of the higher resale value. I would dare to say that for beginners it may be very difficult to judge the quality of a used device. Of course one can also buy used (and well serviced) microscopes from a dealer, and this is indeed a possibility. </p>
<p>During my beginning days of microscopy, I once talked to a &#8220;big four&#8221; microscope manufacturer. I was quite surprised that he gave me a surprisingly balanced advice on which microscope combination to buy. He could easily have sold me a microscope which would have been much more expensive (and also not suitable for my needs). I was a beginner. The salesman was quite honest and told me that they have no interest in selling me a microscope which is too expensive and not suitable, for the sake of earning quick money. I summarize his words: &#8220;We have a long-term view. The beginning microscopy users of today are the researchers of tomorrow. We want to keep beginners and children interested in microscopy. If the microscopy enthusiasts have a good view about our company (and do not feel ripped-off), then they will also purchase our microscopes when they are in a position to decide if they should equip a whole laboratory with microscopes.&#8221; Interesting point.</p>
<p><strong>What about &#8220;computer microscopes&#8221;</strong> Back in 1999, Intel introduced the <a href="http://micro.magnet.fsu.edu/optics/intelplay/index.html">QX3 Play microscope</a>, which needed to be connected to a computer. The QX3 was later replaced by the QX5. You can read an extensive <a href="http://www.microscopy-uk.org.uk/mag/indexmag.html?http://www.microscopy-uk.org.uk/mag/artdec04/dwqx5.html">QX5 USB microscope review here</a>. The image quality of this device seems to be good, and I already have read several positive reviews about this device. It has the advantage that this microscope is able to cover both worlds, the world of compound and of stereo microscopes. Still, these microscopes are sold as &#8220;toys&#8221; and (according to a review I read) are not able to provide the same image quality as dedicated student and educational microscopes (of comparable price). A disadvantage is, that it is necessary to connect the device to a computer in order to see something (it has no eyepiece). Microscopes like these are not standard and if you want to teach children proper microscopy use (operating the fine and coarse focus, operating the diaphragm, changing objectives, proper microscope cleaning, etc.) then I would get a standard device. You can also take pictures through a regular microscope with a compact camera using afocal photography.</p>
<p><strong>What accessories are needed</strong> You also need: an introductory book about microscopy (to keep the children motivated), slides and cover glasses, and tweezers. These things are not expensive. I also highly recommend that you get a slide box with ready-made samples from a wide range. Do not get slides made for medical students, which show a wide range of different anatomical sections (boring). Get slide boxes that contain both plants, insects, animal tissue, water samples, sand, radiolaria, etc, etc. To keep the children interested. This way the children have something to look at right away, without the need to prepare slides on the day they receive the microscope.  </p>
<p><strong>This all may sound complicated. What is the easiest approach?</strong> Find a dedicated shop selling microscopes and contact them. Often educational supplies companies will have several microscopes in their product range. Other companies are specifically specialized for microscopes. Study the catalog, do some research (your kids will need support preparing the samples anyway). Write them an email and be honest about the needs. Tell them that you need a scope for your kids and also tell them if it should be a compound or stereo microscope. A serious dealer will know the requirements and will not sell you an inappropriate device. They are interested in long term customer relationships and not in quick money.</p>
<p>Comments and opinions are appreciated!</p>
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		<item>
		<title>How to obtain the best resolution with your microscope</title>
		<link>http://www.microbehunter.com/2010/06/19/how-to-obtain-the-best-resolution-with-your-microscope/</link>
		<comments>http://www.microbehunter.com/2010/06/19/how-to-obtain-the-best-resolution-with-your-microscope/#comments</comments>
		<pubDate>Sat, 19 Jun 2010 18:44:09 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Microscopy Basics]]></category>
		<category><![CDATA[Techniques]]></category>
		<category><![CDATA[Theory]]></category>
		<category><![CDATA[advice]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[contrast]]></category>
		<category><![CDATA[Photography]]></category>
		<category><![CDATA[photomicrographs]]></category>
		<category><![CDATA[resolution]]></category>
		<category><![CDATA[slides]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=2467</guid>
		<description><![CDATA[The resolution that a microscope is capable of achieving is probably the single most important factor that determines the quality of a microscopic image. Without a sufficiently high resolution, magnification is not possible without loss of quality. There are a variety of different factors that determine the achievable resolution. Some of these factors can not be actively influenced by the microscopist, others can. Some of the factors play a larger role, others a smaller one. In the following post, I want to summarize some of these factors.]]></description>
			<content:encoded><![CDATA[<p>The resolution that a microscope is capable of achieving is probably the single most important factor that determines the quality of a microscopic image. Without a sufficiently high resolution, magnification is not possible without loss of quality. Read the following introductory post: <a href='http://www.microbehunter.com/2008/12/12/magnification-and-resolution/'>Magnification and Resolution</a>.</p>
<p>There are a variety of different factors that determine the achievable resolution. Some of these factors can not be actively influenced by the microscopist, others can. Some of the factors play a larger role, others a smaller one. In the following post, I want to summarize some of these factors.</p>
<h2>Objective-related factors</h2>
<ul>
<li><strong>Correction of lens errors:</strong> In contrast to achromatic objectives, apochromatic objectives focus more colors of the spectrum to one point. This results in a sharper image.</li>
<li><strong>The numerical aperture of the objective:</strong> This value is printed on the objective. The higher the value, the higher the resolution. The numerical aperture is a dimension less value which represents the cone of light that can be caught by the objective.</li>
</ul>
<h2>Lighting system</h2>
<ul>
<li><strong>General color of light:</strong> The shorter the wavelength, the higher the resolution. If your microscope uses halogen or tungsten lamps (instead of LEDs), then the color of the light will shift towards the red end of the spectrum with increasing age. This will reduce the resolution. The color of the light also changes with its intensity. If you turn up the light to maximum intensity, then the color of the light will be more towards the blue end of the spectrum (shorter wavelength and higher resolution). LEDs do not change their color with age or brightness. </li>
<li><strong>Light spectrum (color range):</strong> The color range may also impact on resolution. In the case of monochromatic light, chromatic aberration does not play a role and the light can be focused on one point.</li>
</ul>
<h2>Specimen-related factors</h2>
<ul>
<li><strong>The correct thickness of the cover glass:</strong> The correct cover glass thickness is extremely important for high numerical-aperture objectives. For other objectives, the effect may not be noticeable.</li>
<li><strong>The correct refractive index of the cover glass:</strong> This is something that you do not have to worry about, this is the task of the cover glass manufacturer.</li>
<li><strong>The correct refractive index of the mounting medium:</strong> This one should be as close to the refractive index of glass as possible.</li>
<li><strong>Thickness of the mounting medium:</strong> the thinner the better.</li>
<li><strong>The presence of immersion oil:</strong> Objectives that carry the label &#8220;OIL&#8221; need the correct immersion oil for best resolution.  </li>
</ul>
<h2>Adjustments of the microscope</h2>
<ul>
<li><strong>The correct condenser diaphragm setting:</strong> This setting must match the numerical aperture of the microscope in use.</li>
<li><strong>The correct setting of the correction collar:</strong> Some objectives have a correction collar (a turnable ring) to adjust to the cover glass thickness. Most objectives do not have one, however.</li>
</ul>
<h2>Maintenance-related factors</h2>
<ul>
<li><strong>The cleanness of the optical parts:</strong> Dust and dirt generally decrease image quality and are a big annoyance, especially if one uses dark-field microscopy.</li>
</ul>
<h2>Stability of the photomicrographic system</h2>
<ul>
<li><strong>Moving objects:</strong> Moving cells naturally cause a blurring when long exposure times are used. This decreases resolution of the moving object.</li>
<li><strong>Stability:</strong> A shaky photographic system generally decreases resolution of the image.</li>
</ul>
<h2>The checlkist: how to obtain the best image quality</h2>
<ul>
<li>Use new light bulbs and turn up the light. This will reduce the wavelength of the light. Alternatively, use a blue filter.</li>
<li>Use cover glasses of the correct thickness and make sure that the mounting medium has a refractive index which is close to the refractive index of glass.</li>
<li>Adjust the condenser aperture diaphragm to the numerical aperture of the objective</li>
<li>If you use oil immersion, make sure that the oil has the correct refractive index</li>
<li>Use fresh light bulbs (low in red light, high in blue light)</li>
<li>Keep the microscope free of dust</li>
<li>Make sure that the objectives, eye pieces are clean</li>
</ul>
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		</item>
		<item>
		<title>Volvox</title>
		<link>http://www.microbehunter.com/2010/05/22/volvox/</link>
		<comments>http://www.microbehunter.com/2010/05/22/volvox/#comments</comments>
		<pubDate>Sat, 22 May 2010 10:00:18 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Observations and pictures]]></category>
		<category><![CDATA[algae]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[glycerol gelatin]]></category>
		<category><![CDATA[volvox]]></category>

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		<description><![CDATA[Volvox is a fresh water green algae and a member of the Chlorophyta. The picture shows a spherical volvox colony, each ball can contain hundreds, if not thousands of individual cells. The picture shows six daughter colonies inside the main colony. The main colony disintegrates and the daughter colonies are then released. Volvox is a [...]]]></description>
			<content:encoded><![CDATA[<p>
<div style='float:right; width:200px; margin-left:10px; margin-bottom:20px; margin-right:5px; clear:both;'>

<a href='http://www.microbehunter.com/wp/view-image?filename=http://www.microbehunter.com/wp/wp-content/uploads/2010/05/volvox.jpg&alt=&caption='>
<img src='http://www.microbehunter.com/wp/wp-content/uploads/2010/05/volvox.jpg' alt='' style='width:200px;'>
</a>
<div style='font-size:8pt; font-weight:bold; font-style:italic; padding-left:5px; padding-top:5px; margin:0px; line-height:12px;'> <br></div>
</div>
 Volvox is a fresh water green algae and a member of the <em>Chlorophyta</em>. The picture shows a spherical volvox colony, each ball can contain hundreds, if not thousands of individual cells. The picture shows six daughter colonies inside the main colony. The main colony disintegrates and the daughter colonies are then released. Volvox is a nice example of an organism which shows first signs of multicellularity. Larger colonies can be up to 1mm in diameter and can be seen with the unaided eye.</p>
<h2>Reproduction</h2>
<p>Volvox reproduces both sexually and asexually. During asexual reproduction cells from the equator of the colony move to the inside and divide to form daughter colonies. The daughter colonies will grow and multiply. The mother colony will then rupture and release the offspring. </p>
<p>During sexual reproduction, Volvox colonies form sperm and egg cells (ova). The sperm cells will swarm out to find ova in other colonies. The fertilized egg cells will then form new colonies.</p>
<h2>Growing and observing Volvox</h2>
<p>Microscopists who are interested in observing Volvox should try to investigate water samples from ponds and puddles.   It is also possible to grow Volvox at home. Volvox likes to grow in nutrient-rich water. Dilute some plant fertilizer in water and add some pond water containing Volvox (or other green algae that you want to grow). Place the container on the window sill for several days but prevent direct sunlight as this may cause overheating, and drives out the CO2 for photosynthesis from the water. Alternatively, you can also use a plankton net to catch the colonies.</p>
<p>For making permanent mounts, it&#8217;s probably best to use a water-based mounting medium such as glycerin gelatin. Solvent based media may dissolve the chlorophyll of the chloroplasts and may cause the cells to lose water and shrink. </p>
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		<item>
		<title>Q &amp; A: What people searched for</title>
		<link>http://www.microbehunter.com/2010/05/09/q-a-what-people-searched-for/</link>
		<comments>http://www.microbehunter.com/2010/05/09/q-a-what-people-searched-for/#comments</comments>
		<pubDate>Sun, 09 May 2010 21:20:27 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Microscopy Basics]]></category>
		<category><![CDATA[Microscopy FAQ]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[compound microscope]]></category>
		<category><![CDATA[electron microscope]]></category>
		<category><![CDATA[magnification]]></category>
		<category><![CDATA[objective]]></category>
		<category><![CDATA[sem]]></category>
		<category><![CDATA[tem]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=2429</guid>
		<description><![CDATA[In this post I&#8217;d like to address some of the search queries that people typed to find this web site. Naturally people typed many, many more search queries, most of the queries are made of 1 or 2 words. I selected the longer ones for this post. Q: What is the principal advantage of an [...]]]></description>
			<content:encoded><![CDATA[<p>In this post I&#8217;d like to address some of the search queries that people typed to find this web site. Naturally people typed many, many more search queries, most of the queries are made of 1 or 2 words. I selected the longer ones for this post.</p>
<p><strong>Q: What is the principal advantage of an electron microscope over an optical microscope?</strong><br />
A: Electron microscopes have a far greater resolution compared to optical microscopes. Consequently, a much higher magnification is possible. Optical microscopes can magnify up to about 1000x, electron microscopes up to about 1 000 000x.</p>
<p><strong>Q: How to increase resolution of image?</strong><br />
A: The resolution of am image can not simply be increased, once a picture has been taken through the microscope. Information which is not present in the first place can not simply be created. When taking pictures with the microscope, one should make sure that all the parameters are optimized to reach the maximum theoretical resolution. This includes a steady camera-microscope connection, the correct condenser diaphragm setting, the optimum mounting medium, etc.</p>
<p><strong>Q: Parts of the microscope and their functions?</strong><br />
A: This question can not simply be answered in a line or two. I would recommend to watch the <a href="http://www.microbehunter.com/2009/02/14/introducing-the-microscope/">video</a>, or read the post: <a href='http://www.microbehunter.com/2008/12/31/parts-of-a-compound-microscope/'>Parts of a Compound Microscope</a></p>
<p><strong>Q: What are some microbes that you can see under a microscope?</strong><br />
A: Ultimately you can see all types of microbes, provided you have the right type of microscope and use the appropriate technique. Viruses can be seen with electron microscopes, but not with light microscopes. Bacteria can best be seen with light microscopes that use phase contrast optics. Single celled eukaryotes (ciliates, algae etc.) as well as multicellular microorganisms can be seen with bight-field compound microscopes and also with stereo microscopes.</p>
<p><strong>Q: How many different types of microscopes are there?</strong><br />
A: It depends on what system of classification you use and how many subdivisions you include. One common way to classify microscopes is into optical and non-optical microscopes. I already wrote a post on different types of microscopes: <a href=''></a></p>
<p><strong>Q: Which type of microscope would be best to use if you wanted a 3-dimensional view of a bacteria cell?</strong><br />
A: Here you have to be careful, the question can be misinterpreted. For true 3D, stereoscopic views two different images are needed. </p>
<p>There are two types of microscopes that provide 3-D (stereoscopic) views:</p>
<ul>
<li><strong>Scanning electron microscopes:</strong> These devices scan the surface of the object. One single image is produced, which appears 3D (including &#8220;shadows&#8221; and surface texture). An example image can be found in this article: </li>
<li><strong>Confocal laser microscopes:</strong> These are highly specialized optical microscopes, in which a computer computes a final. In this case it is possible to compute two different pictures, one for the left and one for the right eye. The image is then truly stereoscopic</li>
</ul>
<p><strong>Q: Compare the kind of image obtained with scanning electron microscope with that obtained using transmission electron microscopy.</strong><br />
A: In short, scanning electron microscope (SEMs) produce images that have a 3D appearance, Transmission electron microscopes (TEMs) produce 2D images.</p>
<p><strong>Q: Why is it desirable that microscope objectives be parfocal?</strong><br />
A: Parfocal objectives are not only desirable, but (in my humble view) a necessity for efficient microscopic work. Parfocal objectives manufactured in such a way that a change in objective will not result in a significant loss of focus. If the image is in focus using a 4x objective, then the image is also in focus when a 10x objective is used. Significant refocussing is not necessary with parfocal objectives. </p>
<p><strong>Q: Part of the microscope that contains the ocular lens</strong><br />
A: One word answer: the eyepiece. Sometimes the terms &#8220;eyepiece&#8221; and &#8220;ocular lens&#8221; are used interchangeably, but the eye piece contains more than one lens element.</p>
<p><strong>Q: Different types of microbes</strong><br />
A: The term &#8220;microbe&#8221; is a colloquial term which refers to organisms (living things) that are too small to be seen with the unaided eye. The term is somewhat unclear, because microscopic insects (and other multicellular organisms) generally are not included. Viruses are not alive and therefore do not quality as microorganisms. Without going into too much detail, microorganisms include prokaryotes (<em>Bacteria</em>, <em>Archaea</em>), microscopic fungi, single-celled algae and protozoa (ciliates and amoeba belong to this category, among others). </p>
<p><strong>Q: Who invented the microscope?</strong><br />
A: Which microscope? There are many kinds. In 1931, Ernst Ruska and Max Knoll constructed the first prototype of an electron microscope. Optical microscopes as we know them today evolved over a longer time period. Many people contributed to the developments. Two notable figures are Antonie van Leeuwenhoek (1632 &#8211; 1723) and Robert Hook (1635 &#8211; 1703).  Leeuwenhoek made single-lens microscopes with which he discovered bacteria. Hook constructed compound microscopes (composed of objective and ocular lenses) and coined the term &#8220;cell&#8221;.</p>
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		<title>What in the world is microbe hunting?</title>
		<link>http://www.microbehunter.com/2010/01/04/what-in-the-world-is-microbe-hunting/</link>
		<comments>http://www.microbehunter.com/2010/01/04/what-in-the-world-is-microbe-hunting/#comments</comments>
		<pubDate>Mon, 04 Jan 2010 22:18:53 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Editorial]]></category>
		<category><![CDATA[beginner]]></category>

		<guid isPermaLink="false">http://www.microbehunter.com/?p=1427</guid>
		<description><![CDATA[A quick Google search of the term &#8220;microbe hunting&#8221; revealed 2460 hits, the term &#8220;microbe hunter&#8221; a mere 21300 hits. The combination of these words with &#8220;amateur microscopy&#8221; returned a total of&#8230; 1 and 4 hits respectively. This is not much. The one returned hit is particularly interesting. It is from Popular Science, September 1934, [...]]]></description>
			<content:encoded><![CDATA[<p>A quick Google search of the term &#8220;microbe hunting&#8221; revealed 2460 hits, the term &#8220;microbe hunter&#8221; a mere 21300 hits. The combination of these words with &#8220;amateur microscopy&#8221; returned a total of&#8230; 1 and 4 hits respectively. This is not much. The one returned hit is particularly interesting. It is from <a href="http://books.google.com/books?id=HCgDAAAAMBAJ&#038;lpg=PA111&#038;ots=8GvgBR1_-q&#038;dq=%22microbe%20hunting%22%20%22amateur%20microscopy%22&#038;pg=PA42#v=onepage&#038;q=%22microbe%20hunting%22%20%22amateur%20microscopy%22&#038;f=false">Popular Science, September 1934</a>, entitled &#8220;Microbe hunting with your Microscope&#8221;. It gives a nice description on how to prepare bacteria for microscopic observation.</p>
<p>Microbe hunting &#8211; a new term to an old pastime and hobby? The terms seems to be around now for over 70 years, but is still not used widely. Maybe it is time to establish this term a bit more. I have to admit that &#8220;Amateur Microscopy?&#8221; does sound a bit more &#8220;professional&#8221; (is this a paradox?), but the sentence &#8220;I&#8217;m a microbe hunter&#8221; flows much easier than &#8220;I&#8217;m an amateur microscopist&#8221;, so maybe this is enough justification to establish that term, even if amateur microscopists observe specimens other than microorganisms as well.</p>
<p>In any case, I herewith propose that the term &#8220;Microbe Hunting&#8221; be used interchangeably for amateur microscopy. Comments?</p>
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		<title>Increasing Contrast using Optical Methods</title>
		<link>http://www.microbehunter.com/2009/01/31/increasing-contrast-using-optical-methods/</link>
		<comments>http://www.microbehunter.com/2009/01/31/increasing-contrast-using-optical-methods/#comments</comments>
		<pubDate>Sat, 31 Jan 2009 18:26:23 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Microscopy Basics]]></category>
		<category><![CDATA[Theory]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[contrast]]></category>
		<category><![CDATA[filter]]></category>
		<category><![CDATA[illuminatioin]]></category>
		<category><![CDATA[polarization]]></category>
		<category><![CDATA[Techniques]]></category>

		<guid isPermaLink="false">http://microscopy.okim.info/?p=1070</guid>
		<description><![CDATA[Many microscopic specimens are either very thin or transparent or lack color. They lack contrast and can not be easily seen in bright microscope light. In many cases it is not possible or desirable to chemically stain the specimens. In this case, optical techniques become  necessary to enhance contrast.]]></description>
			<content:encoded><![CDATA[<div class='summary'>Many microscopic specimens are either very thin or transparent or lack color. They lack contrast and can not be easily seen in bright microscope light. In many cases it is not possible or desirable to chemically stain the specimens. In this case, optical techniques become  necessary to enhance contrast.</div>
<p>Bright-field microscopy is useful for specimens, which possess a sufficiently high natural color contrast with the background, or for specimens that can easily be stained by dyes. Now, it is possible to increase the contrast by closing the condenser aperture diaphragm. This, however, results in a reduction of the resolution and introduces diffraction artifacts. The natural colors also become less visible, as the whole image darkens. To overcome these limitations of bright-field microscopy, different optical contrasting techniques were invented.</p>
<ul>
<li><strong>Dark Field Microscopy:</strong> This is one of the easiest and cheapest contrast-enhancing techniques. The main light beam is not able to reach the objective (and therefore the eye), resulting in a black background image. Light is capable of striking the specimen, however. This light is then scattered into various directions, and is also picked up by the objective. The specimen will appear bright on a dark background. Dark-field illumination can be achieved in two ways. Either a specialized dark-field condenser is used, or a so-called patch-stop filter is inserted into the filter holder of the condenser. The patch-stop possesses a central black area which blocks the main light of the illumination system. The patch-stop may not result in a satisfactory image quality for all magnifications, it is advised to experiment with the size of the central black area. For more information: <a href="http://www.microbehunter.com/2008/12/darkfield-microscopy/">Darkfield Microscopy</a>.</li>
<li><strong>Rheinberg Illumination:</strong> This contrast enhancing technique is closely related to the dark-field method. In this case the patch-stop filter is modified in such a way that the central black area is replaced with a strongly colored, transparent film. The color of the central area of the filter represents the background color of the microscopic image. The peripheral area of the filter possesses a different color. Specimens will then possess the color of the peripheral area. These filters can be easily made by printing the filter using a color printer on an overhead transparency. </li>
<li><strong>Phase contrast microscopy:</strong> This system was invented by Frits Zernike (who received the Nobel Prize for this invention in 1953). Transparent, colorless objects can differ from their surrounding medium (for example water, or the mounting medium) in that they possess a different refractive index. Using bright field microscopy alone, these objects would nearly be invisible. The phase contrast optics of a microscope is able to convert the differences in the refractive index into a difference in brightness. Depending on the system used, the specimens will either appear bright on a dark background, or dark on a bright background. Phase contrast microscopes need special phase contrast objectives and a dedicated phase contrast condenser. In many cases, the phase contrast objectives can also be used for regular bright-field work, with a slight decrease in image quality. Phase contrast microscopy is commonly used for the observation of bacteria, which are otherwise difficult to see.</li>
<li><strong>Nomarski Differential Interference Contrast (DIC):</strong> The theoretical background of this method is complex. The light of the microscope is split up into two beams by a specialized prism which is located beneath the condenser. One beam passes through the specimen, the other beam does not. The two beams therefore have to pass through different refractive indexes and are then allowed to interfere with each other. The result is an image which gives the impression of being three-dimensional. A cell, for example, will appear to be illuminated from the side, with one corner darker than the other. The individual cell organelles will appear to stand out (or be depressed). The 3-dimensional appearance is an illusion, formed by the shadows and highlights. The formed image is similar to oblique illumination.</li>
<li><strong>Polarization:</strong> This contrast enhancing method is commonly used when viewing bifringent speciems, such as starch grains, crystals and cellulose. The light from the illumination system passes through a polarizing filter and then through the bifringent specimen. These specimens are able to interact with the light in such a way, that the light is split into two components. This light continues, and passes through a second polarizing filter, where it is allowed to interfere. The specimens will appear as bright, colorful objects on a dark background. The colors can change when the filters are rotated. Dedicated polarizing microscopes possess a rotating stage and tension-free objective lenses. Possible tension in glass modifies the plane of the polarized light. </li>
<li><strong>Fluorescence:</strong> Certain specimens, such as chloroplasts or cell walls of plant cells, have the tendency to glow in a visible color when flooded with ultraviolet (UV) light. It is also possible to selectively stain the different parts of a cell with flurochomes (fluorescing stains) to visualize them. The UV light can either be passed through the specimen either from the bottom or from the top (&#8220;epi-illumination&#8221;). It is recommended to use fluorite objectives, otherwise the glass elements, the lenses, will start to glow as well. </li>
<li><strong>Oblique Illumination:</strong> In this method, the illumination system of the microscope is placed-off center. The light strikes the specimen from the side. The specimens appear darker on one side compared to the other side. It is also possible to use a patch stop filter which allows light to pass through only one side. The effect is, that the specimen seems to create a shadow and appears three-dimensional. See <a href="http://www.microbehunter.com/2008/12/oblique-illumination/">Oblique Illumination</a> for sample images.</li>
<li><strong>Using Color Filters:</strong> Color filters absorb the complimentary color. A red filter will result in green chloroplasts to appear dark. A blue &#8220;daylight&#8221; filter is commonly used as well. It will absorb the red parts of the spectrum and will enhance the contrast of objects that possess a red color. The blue filter will also increase the resolution, as it allows only the passage of the shorter wavelengths. </li>
</ul>
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		<title>Electron Microscopes vs. Optical (Light) microscopes</title>
		<link>http://www.microbehunter.com/2009/01/22/electron-microscopes-vs-optical-light-microscopes/</link>
		<comments>http://www.microbehunter.com/2009/01/22/electron-microscopes-vs-optical-light-microscopes/#comments</comments>
		<pubDate>Thu, 22 Jan 2009 20:06:34 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Microscopy Basics]]></category>
		<category><![CDATA[Theory]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[compound microscope]]></category>
		<category><![CDATA[electron microscope]]></category>

		<guid isPermaLink="false">http://microscopy.okim.info/?p=1028</guid>
		<description><![CDATA[This post outlines the advantages and disadvantages of electron microscopes in contrast to optical (light) microscopes. Each type of microscope is designed for different areas of applications.]]></description>
			<content:encoded><![CDATA[<div id="attachment_2417" class="wp-caption alignnone" style="width: 610px"><a href="http://www.microbehunter.com/2009/01/22/electron-microscopes-vs-optical-light-microscopes/sem_pollen-3/" rel="attachment wp-att-2417"><img class="size-full wp-image-2417 " title="sem_pollen" src="http://www.microbehunter.com/wp/wp-content/uploads/2010/04/sem_pollen.jpg" alt="SEM of pollen grains" width="600" height="457" /></a><p class="wp-caption-text">Scanning electron micrograph (SEM) of various Pollen. Public domain image reference: Dartmouth Electron Microscope Facility, Dartmouth College</p></div>
<p>&nbsp;</p>
<p>Check this link for even more different types of microscopes: <a href='http://www.microbehunter.com/2010/01/19/different-types-of-microscopes/'>Different types of microscopes</a> <div class='summary'>This post outlines the advantages and disadvantages of electron microscopes in contrast to optical (light) microscopes. Each type of microscope is designed for different areas of applications.</div></p>
<h2>Electron vs. Light Microscopes: Basic Differences</h2>
<p>There are not many things that these two microscope types have in common. Both electron and light microscopes are technical devices which are used for visualizing structures that are too small to see with the unaided eye, and both types have relevant areas of applications in biology and the materials sciences. And this is pretty much it. The method of visualizing the structures is very different. Electron Microscopes use electrons and not photons (light rays) for visualization. The first electron microscope was constructed in 1931, compared to optical microscopes they are a very recent invention.</p>
<h2>Electron microscopes have certain advantages over optical microscopes:</h2>
<ul>
<li>The biggest advantage is that they have a higher resolution and are therefore also able of a higher magnification (up to 2 million times). Light microscopes can show a useful magnification only up to 1000-2000 times. This is a physical limit imposed by the wavelength of the light. Electron microscopes therefore allow for the visualization of structures that would normally be not visible by optical microscopy.</li>
<li>Depending on the type of electron microscope, it is possible to view the three dimensional external shape of an object (Scanning Electron Microscope, SEM).</li>
<li>In scanning electron microscopy (SEM), due to the nature of electrons, electron microscopes have a greater depth of field compared to light microscopes. The higher resolution may also give the human eye the subjective impression of a higher depth of field.</li>
</ul>
<h2>Electron microscopes have a range of disadvantages as well:</h2>
<ul>
<li>They are extremely expensive.</li>
<li>Sample preparation is often much more elaborate. It is often necessary to coat the specimen with a very thin layer of metal (such as gold). The metal is able to reflect the electrons.</li>
<li>The sample must be completely dry. This makes it impossible to observe living specimens.</li>
<li>It is not possible to observe moving specimens (they are dead).</li>
<li>It is not possible to observe color. Electrons do not possess a color. The image is only black/white. Sometimes the image is colored artificially to give a better visual impression.</li>
<li>They require more training and experience in identifying artifacts that may have been introduced during the sample preparation process.</li>
<li>The energy of the electron beam is very high. The sample is therefore exposed to high radiation, and therefore not able to live.</li>
<li>The space requirements are high. They may need a whole room.</li>
<li>Maintenance costs are high.</li>
</ul>
<h2>When should one use optical (light) microscopes?</h2>
<p>One big advantage of light microscopes is the ability to observe living cells. It is possible to observe a wide range of biological activity, such as the uptake of food, cell division and movement. Additionally, it is possible to use in-vivo staining techniques to observe the uptake of colored pigments by the cells. These processes can not be observed in real time using electron microscopes, as the specimen has to be fixed, and completely dehydrated (and is therefore dead). The low cost of optical microscopes makes them useful in a wide range of different areas, such as education, the medical sector or for hobbyists. Generally, optical and electron microscopes have different areas of application and they complement each other.</p>
<h2>Different types of electron microscopes</h2>
<p>There are two different types of electron microscopes, scanning electron microscopes (SEM) and transmission electron microscopes (TEM). In the TEM method, an electron beam is passed through an extremely thin section of the specimen. You will get a two-dimensional cross-section of the specimen. SEMs, in contrast, visualize the surface structure of the specimen, providing a 3-D impression. The image above was produced by a SEM.</p>
<h2>Different types of light microscopes</h2>
<p>The two most common types of microscopes are compound microscopes and stereo microscopes (dissecting microscopes). Stereo microscopes are frequently used to observe larger, opaque specimens. They generally do not magnify as much as compound microscopes (around 40x-70x maximum) but give a truly stereoscopic view. This is because the image delivered to each eye is slightly different. Stereo microscopes do not necessarily require elaborate sample preparation.</p>
<p>Compound microscopes magnify up to about 1000x. The specimen has to be sufficiently thin and bright for the microscope light to pass through. The specimen is mounted on a glass slide. Compound microscopes are not capable of producing a 3D (stereoscopic) view, even if they possess two eye pieces. This is because each one of the eyes receives the same image from the objective. The light beam is simply split in two.</p>
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		<title>Common Beginners&#8217; Mistakes</title>
		<link>http://www.microbehunter.com/2008/12/15/common-beginners-mistakes/</link>
		<comments>http://www.microbehunter.com/2008/12/15/common-beginners-mistakes/#comments</comments>
		<pubDate>Mon, 15 Dec 2008 21:33:06 +0000</pubDate>
		<dc:creator>Oliver</dc:creator>
				<category><![CDATA[Microscopy Basics]]></category>
		<category><![CDATA[Techniques]]></category>
		<category><![CDATA[beginner]]></category>
		<category><![CDATA[errors]]></category>
		<category><![CDATA[handling]]></category>
		<category><![CDATA[Maintenance]]></category>
		<category><![CDATA[mistakes]]></category>
		<category><![CDATA[newbie]]></category>
		<category><![CDATA[student]]></category>

		<guid isPermaLink="false">http://microscopy.okim.info/?p=197</guid>
		<description><![CDATA[The following section outlines some of the common beginners' mistakes when operating a microscope. Teachers are advised to instruct their students appropriately, proper microscope technique will not only enhance the image quality but will also lengthen the life-span of the microscopes.]]></description>
			<content:encoded><![CDATA[<p>
<div style='float:right; width:200px; margin-left:10px; margin-bottom:20px; margin-right:5px; clear:both;'>

<a href='http://www.microbehunter.com/wp/view-image?filename=http://www.microbehunter.com/wp/wp-content/uploads/2009/micropix10.jpg&alt=Pumpkin&caption=Vascular_tissue_of_a_pumpkin_plant.'>
<img src='http://www.microbehunter.com/wp/wp-content/uploads/2009/micropix10.jpg' alt='Pumpkin' style='width:200px;'>
</a>
<div style='font-size:8pt; font-weight:bold; font-style:italic; padding-left:5px; padding-top:5px; margin:0px; line-height:12px;'>Vascular tissue of a pumpkin plant. <br></div>
</div>
 <div class='summary'>The following section outlines some of the common beginners&#8217; mistakes when operating a microscope. Teachers are advised to instruct their students appropriately, proper microscope technique will not only enhance the image quality but will also lengthen the life-span of the microscopes.</div></p>
<p>Here is a list of common mistakes which I observed over the years:</p>
<ul>
<li><strong>Viewing specimens without a cover slip:</strong> The objectives are designed to be used with a cover slip. If no cover slip is used (or no water beneath the cover slip and the slide), then the focal distance will change and the quality of the image is reduced as well.</li>
<li><strong>Using immersion oil with a non-immersion objective:</strong> Lower image quality and dirty optics are the consequence. The oil, if not properly cleaned, will start to accumulate dust and image quality may decrease to the extent that no image is visible at all. Use an alcohol:ether mixture and lens paper to clean the objectives, but make sure that the solvent does not contact the lens too long. Otherwise the lens kit holding the lens in place may start to become soft.</li>
<li><strong>Using the coarse focus with higher magnification objectives:</strong> This may result in crashing the objective into the slide. Spring-loaded objectives offer a level of security here.</li>
<li><strong>Turning the fine focus adjustment for a long time to find a focus:</strong> This too may result in crashing the (high-power) objective into the slide. Instruct the students to restart their observation with the low power objective.</li>
<li><strong>Using the iris diaphragm as a means to control the amount of light:</strong> The iris diaphragm of the condenser is there to regulate  resolution and contrast, but not to regulate the amount of light. At high magnifications it may be necessary to open the diaphragm to produce a brighter image, but the students should first use the dimmer to control the light.</li>
<li><strong>Switching the microscope on and off with the dimmer set to the highest light intensity:</strong> The lamp is heated up quickly. It is better to slowly increase the light intensity with the dimmer.</li>
<li><strong>Starting to observe with a high magnification objective:</strong> This is a common thing to observe. Students should start with the lower magnifications first. This allows them to select the area of interest of the specimen.</li>
<li><strong>Using thick, non-translucent specimens:</strong> For specimens of these types, it is better to use a stereo (binocular-) microscope.</li>
<li><strong>Using oil-immersion objectives without oil:</strong> This changes the focal distance of the objective and results in a low quality image. Students may then turn the focus knob to the extent of crashing the slide into the objective.</li>
<li><strong>Moving the microscope with the lamp switched on:</strong> This may result in a lower lamp lifetime. Move the microscope only when the lamp is cold.</li>
</ul>
<p></p>
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